E-DADS Resources
Various tools and resources for the E-DADS project
FreeSurfer 7.1.1 BIDS-App container
- Source code (fork of BIDS-App/freesurfer): github.com/e-dads/freesurfer
- Get the pre-built container from Neil’s dockerhub:
docker pull noxtoby/edads:freesurfer7p1p1 - Contact: Neil at UCL
Running this container on a cluster? Of course you are!
This is how to use docker and docker2singularity to convert the container to a singularity image:
docker run \
-v /var/run/docker.sock:/var/run/docker.sock \
-v /path/to/output/folder:/output \
--privileged -t --rm \
singularityware/docker2singularity \
noxtoby/edads:freesurfer7p1p1
MRIQC 0.16.1 BIDS-App container
- To use this version, the easiest way to build a singularity container is via Poldrack Lab’s dockerhub:
docker pull poldracklab/mriqc:0.16.1